Pavel E Volynsky: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

Don't use scam websites

1

N-terminal amphipathic helix as a trigger of hemolytic activity in antimicrobial peptides: A case study in latarcins

Anton A. Polyansky, Alexander A. Vassilevski, Pavel E. Volynsky, Olga V. Vorontsova, Olga V. Samsonova, Natalya S. Egorova, Nicolay A. Krylov, Alexei V. Feofanov, Alexander S. Arseniev, Eugene V. Gris

Journal:

Year:

2009

Language:

english

File:

PDF, 382 KB

english, 2009

2

Pyrenemethyl ara-Uridine-2′-carbamate: A Strong Interstrand Excimer in the Major Groove of a DNA Duplex

Natalia N. Dioubankova, Andrei D. Malakhov, Dmitry A. Stetsenko, Michael J. Gait, Pavel E. Volynsky, Roman G. Efremov, Vladimir A. Korshun

Journal:

Year:

2003

Language:

english

File:

PDF, 163 KB

english, 2003

3

Development of the force field parameters for phosphoimidazole and phosphohistidine

Yuri A. Kosinsky, Pavel E. Volynsky, Philippe Lagant, Gerard Vergoten, Ei-Ichiro Suzuki, Alexander S. Arseniev, Roman G. Efremov

Journal:

Journal of Computational Chemistry

Year:

2004

Language:

english

File:

PDF, 164 KB

english, 2004

4

Specificity of helix packing in transmembrane dimer of the cell death factor BNIP3: A molecular modeling study

Yana A. Vereshaga, Pavel E. Volynsky, Julia E. Pustovalova, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.16 MB

english, 2007

5

Implicit two-phase solvation model as a tool to assess conformation and energetics of proteins in membrane-mimetic media

Roman Efremov, Pavel Volynsky, Dmitry Nolde, Gérard Vergoten, Alexander Arseniev

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2001

Language:

english

File:

PDF, 236 KB

english, 2001

6

Assessment of conformation and energetics of the N-terminal part of elafin via computer simulations

Roman G. Efremov, Pavel E. Volynsky, Manuel A. M. Dauchez, Dmitry E. Nolde, Alexander S. Arseniev, Alain J. P. Alix

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2001

Language:

english

File:

PDF, 205 KB

english, 2001

7

Association of transmembrane helices: what determines assembling of a dimer?

Roman G. Efremov, Yana A. Vereshaga, Pavel E. Volynsky, Dmitry E. Nolde, Alexander S. Arseniev

Journal:

Journal of Computer-Aided Molecular Design

Year:

2006

Language:

english

File:

PDF, 525 KB

english, 2006

8

Role of Lipid Charge in Organization of Water/Lipid Bilayer Interface: Insights via Computer Simulations

Polyansky, Anton A., Volynsky, Pavel E., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 750 KB

english, 2005

9

Multistate Organization of Transmembrane Helical Protein Dimers Governed by the Host Membrane

Polyansky, Anton A., Volynsky, Pavel E., Efremov, Roman G.

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 1.89 MB

english, 2012

10

Adaptation of a Membrane-active Peptide to Heterogeneous Environment. II. The Role of Mosaic Nature of the Membrane Surface

Polyansky, Anton A., Volynsky, Pavel E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 879 KB

english, 2009

11

Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane

Polyansky, Anton A., Ramaswamy, Rajesh, Volynsky, Pavel E., Sbalzarini, Ivo F., Marrink, Siewert J., Efremov, Roman G.

Journal:

The Journal of Physical Chemistry Letters

Year:

2010

Language:

english

File:

PDF, 3.55 MB

english, 2010

12

Monte Carlo simulations of voltage-driven translocation of a signal sequence

Roman G Efremov, Pavel E Volynsky, Dmitry E Nolde, Annemieke van Dalen, Ben de Kruijff, Alexander S Arseniev

Journal:

Year:

2002

Language:

english

File:

PDF, 138 KB

english, 2002

13

Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin

Roman G. Efremov, Dmitry E. Nolde, Pavel E. Volynsky, Andrei A. Chernyavsky, Peter V. Dubovskii, Alexander S. Arseniev

Journal:

Year:

1999

Language:

english

File:

PDF, 298 KB

english, 1999

14

Interaction of Cardiotoxins with Membranes: A Molecular Modeling Study

Efremov, Roman G., Volynsky, Pavel E., Nolde, Dmitry E., Dubovskii, Peter V., Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 413 KB

english, 2002

15

Left-Handed Dimer of EphA2 Transmembrane Domain: Helix Packing Diversity among Receptor Tyrosine Kinases

Bocharov, Eduard V., Mayzel, Maxim L., Volynsky, Pavel E., Mineev, Konstantin S., Tkach, Elena N., Ermolyuk, Yaroslav S., Schulga, Alexey A., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 771 KB

english, 2010

16

Adaptation of a Membrane-active Peptide to Heterogeneous Environment. I. Structural Plasticity of the Peptide

Polyansky, Anton A., Volynsky, Pavel E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 2.00 MB

english, 2009

17

Spatial Structure and Activity Mechanism of a Novel Spider Antimicrobial Peptide †,‡

Dubovskii, Peter V., Volynsky, Pavel E., Polyansky, Anton A., Chupin, Vladimir V., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Year:

2006

Language:

english

File:

PDF, 222 KB

english, 2006

18

Role of Dimerization Efficiency of Transmembrane Domains in Activation of Fibroblast Growth Factor Receptor 3

Volynsky, Pavel E., Polyansky, Anton A., Fakhrutdinova, Gulfia N., Bocharov, Eduard V., Efremov, Roman G.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 1.47 MB

english, 2013

19

Recognition Specificity of Proteins and Biomembranes: A Computational View

Efremov, Roman G., Volynsky, Pavel E., Pyrkova, Darya V., Konshina, Anastasia G., Krylov, Nikolay A., Pentkovsky, Vladimir M.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 38 KB

english, 2012

20

Structural Aspects of Transmembrane Domain Interactions of Receptor Tyrosine Kinases

Bocharov, Eduard, Mineev, Konstantin, Lesovoy, Dmitry, Goncharuk, Marina, Goncharuk, Sergey, Bocharova, Olga, Volynsky, Pavel, Efremov, Roman, Arseniev, Alexander

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 62 KB

english, 2011

21

Structure-Functional Insight into Transmembrane Helix Dimerization by Protein Engineering, Molecular Modeling and Heteronuclear NMR Spectroscopy

Bocharov, Eduard, Volynsky, Pavel, Mineev, Konstantin, Lesovoy, Dmitry, Nadezhdin, Kirill, Bocharova, Olga, Goncharuk, Marina, Goncharuk, Sergey, Efremov, Roman, Arseniev, Alexander

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 37 KB

english, 2012

22

Three-Dimensional Structure/Hydrophobicity of Latarcins Specifies Their Mode of Membrane Activity †,‡

Dubovskii, Peter V., Volynsky, Pavel E., Polyansky, Anton A., Karpunin, Dmitry V., Chupin, Vladimir V., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Year:

2008

Language:

english

File:

PDF, 340 KB

english, 2008

23

Effect of Lipid Composition on the “Membrane Response” Induced by a Fusion Peptide †

Volynsky, Pavel E., Polyansky, Anton A., Simakov, Nikolay A., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Year:

2005

Language:

english

File:

PDF, 845 KB

english, 2005

24

Helix Interactions in Membranes: Lessons from Unrestrained Monte Carlo Simulations

Vereshaga, Yana A., Volynsky, Pavel E., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Chemical Theory and Computation

Year:

2005

Language:

english

File:

PDF, 798 KB

english, 2005

25

The Membrane-proximal Fusion Domain of HIV-1 GP41 Reveals Sequence-specific and Fine-tuning Mechanism of Membrane Binding

Efremov, Roman G., Volynsky, Pavel E., Nolde, Dmitry E., Vergoten, Gérard, Arseniev, Alexander S.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2007

Language:

english

File:

PDF, 1.11 MB

english, 2007

26

COMPUTER SIMULATIONS OF MEMBRANE-LYTIC PEPTIDES: PERSPECTIVES IN DRUG DESIGN

POLYANSKY, ANTON A., VOLYNSKY, PAVEL E., EFREMOV, ROMAN G.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2007

Language:

english

File:

PDF, 390 KB

english, 2007

27

Liquid but Durable: Molecular Dynamics Simulations Explain the Unique Properties of Archaeal-Like Membranes

Chugunov, Anton O., Volynsky, Pavel E., Krylov, Nikolay A., Boldyrev, Ivan A., Efremov, Roman G.

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 2.35 MB

english, 2014

28

Adaptable Lipid Matrix Promotes Protein–Protein Association in Membranes

Kuznetsov, Andrey S., Polyansky, Anton A., Fleck, Markus, Volynsky, Pavel E., Efremov, Roman G.

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 7.45 MB

english, 2015

29

HER2 Transmembrane Domain Dimerization Coupled with Self-Association of Membrane-Embedded Cytoplasmic Juxtamembrane Regions

Bragin, Pavel E., Mineev, Konstantin S., Bocharova, Olga V., Volynsky, Pavel E., Bocharov, Eduard V., Arseniev, Alexander S.

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 950 KB

english, 2015

30

Influence of Ether Bonds and Branched Lipid Tails on Stability of Membranes to Pore Formation

Panov, Petr V., Akimov, Sergei A., Volynsky, Pavel E., Batishchev, Oleg V.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 57 KB

english, 2015

31

Structure elucidation of dimeric transmembrane domains of bitopic proteins

Bocharov, Eduard V., Volynsky, Pavel E., Pavlov, Konstantin V., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Cell Adhesion & Migration

Year:

2010

Language:

english

File:

PDF, 1.28 MB

english, 2010

32

SPIE Proceedings [SPIE SPIE Optical Metrology - Munich, Germany (Sunday 21 June 2015)] Optical Measurement Systems for Industrial Inspection IX - Evaluation of interference fringe parameters using sequential Monte Carlo method

Lehmann, Peter, Osten, Wolfgang, Albertazzi Gonçalves, Armando, Ermolaev, Petr A., Volynsky, Maxim A., Skakov, Pavel A.

Year:

2015

Language:

english

File:

PDF, 576 KB

english, 2015

33

Modulation of axonal signalling in type 1 episodic ataxia

Vivekananda, Umesh, Novak, Pavel, Volynski, Kirill, Kullmann, Dimitri

Journal:

Year:

2016

Language:

english

File:

PDF, 60 KB

english, 2016

34

Dynamic Structural/Amphiphilic “Portrait” of Biomembranes as their Fundamental Property Relevant to Function: Results of Atomistic Simulations

Efremov, Roman G., Pyrkova, Darya V., Krylov, Nikolay A., Volynsky, Pavel E., Polyansky, Anton A.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

35

Modeling of Peptides in Implicit Membrane-Mimetic Media

Efremov, Roman G., Nolde, Dmitry E., Volynsky, Pavel E., Arseniev, Alexander S.

Journal:

Molecular Simulation

Year:

2000

Language:

english

File:

PDF, 1.01 MB

english, 2000

36

GMDP: unusual physico-chemical and biological properties of the anomeriс forms

Meshcheryakova, Elena A., Mineev, Konstantin S., Volynski, Pavel E., Andronova, Tatiana M., Ivanov, Vadim T.

Journal:

Journal of Peptide Science

Year:

2015

Language:

english

File:

PDF, 630 KB

english, 2015

37

Low Stress Ion Conductance Microscopy of Sub-Cellular Stiffness

Clarke, Richard W., Novak, Pavel, Zhukov, Alexander, Tyler, Eleanor J., Cano-Jaimez, Marife, Drews, Anna, Richards, Owen, Volynski, Kirill, Bishop, Cleo, Klenerman, David

Journal:

Year:

2016

Language:

english

File:

PDF, 2.36 MB

english, 2016

38

Temperature-sensitive gating of TRPV1 channel as probed by atomistic simulations of its trans- and juxtamembrane domains

Chugunov, Anton O., Volynsky, Pavel E., Krylov, Nikolay A., Nolde, Dmitry E., Efremov, Roman G.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.27 MB

english, 2016

39

Kv1.1 channelopathy abolishes presynaptic spike width modulation by subthreshold somatic depolarization

Vivekananda, Umesh, Novak, Pavel, Bello, Oscar D., Korchev, Yuri E., Krishnakumar, Shyam S., Volynski, Kirill E., Kullmann, Dimitri M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

40

Temperature-Sensitive Gating of TRPV1 Channel as Probed by Atomistic Simulations

Chugunov, Anton O., Volynsky, Pavel E., Krylov, Nikolay A., Nolde, Dmitry E., Efremov, Roman G.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017

41

The Conformation of the Epidermal Growth Factor Receptor Transmembrane Domain Dimer Dynamically Adapts to the Local Membrane Environment

Bocharov, Eduard V., Bragin, Pavel E., Pavlov, Konstantin V., Bocharova, Olga V., Mineev, Konstantin S., Polyansky, Anton A., Volynsky, Pavel E., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.48 MB

english, 2017

42

Energy Landscape of Pore Formation in Bilayer Lipid Membrane

Akimov, Sergey A., Volynsky, Pavel E., Galimzyanov, Timur R., Kuzmin, Peter I., Pavlov, Konstantin V., Batishchev, Oleg V.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 46 KB

english, 2017

43

Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism

Mineev, Konstantin S., Goncharuk, Sergey A., Goncharuk, Marina V., Volynsky, Pavel E., Novikova, Ekaterina V., Aresinev, Alexander S.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 4.06 MB

english, 2017

44

Pore formation in lipid membrane II: Energy landscape under external stress

Akimov, Sergey A., Volynsky, Pavel E., Galimzyanov, Timur R., Kuzmin, Peter I., Pavlov, Konstantin V., Batishchev, Oleg V.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 5.19 MB

english, 2017

45

Pore formation in lipid membrane I: Continuous reversible trajectory from intact bilayer through hydrophobic defect to transversal pore

Akimov, Sergey A., Volynsky, Pavel E., Galimzyanov, Timur R., Kuzmin, Peter I., Pavlov, Konstantin V., Batishchev, Oleg V.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 5.88 MB

english, 2017

46

Impact of Membrane Partitioning on the Spatial Structure of an S-type Cobra Cytotoxin

Dubovskii, Peter V., Dubinnyi, Maxim A., Volynsky, Pavel E., Pustovalova, Yulia E., Konshina, Anastasia G., Utkin, Yuri N., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2017

Language:

english

File:

PDF, 2.97 MB

english, 2017

47

Structural basis of the signal transduction via transmembrane domain of the human growth hormone receptor

Bocharov, Eduard V., Lesovoy, Dmitry M., Bocharova, Olga V., Urban, Anatoly S., Pavlov, Konstantin V., Volynsky, Pavel E., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2018

Language:

english

File:

PDF, 22.01 MB

english, 2018

48

Improving therapeutic potential of antibacterial spider venom peptides: coarse-grain molecular dynamics guided approach

Dubovskii, Peter V, Ignatova, Anastasia A, Volynsky, Pavel E, Ivanov, Igor A, Zhmak, Maxim N, Feofanov, Alexey V, Efremov, Roman G

Journal:

Future Medicinal Chemistry

Year:

2018

Language:

english

File:

PDF, 4.45 MB

english, 2018

49

Specific refolding pathway of viscumin A chain in membrane-like medium reveals a possible mechanism of toxin entry into cell

Volynsky, Pavel E., Nolde, Dmitry E., Zakharova, Galina S., Palmer, Rex A., Tonevitsky, Alexander G., Efremov, Roman G.

Journal:

Scientific Reports

Year:

2019

File:

PDF, 2.21 MB

2019

50

Dynamic “Molecular Portraits” of Proteins and Cell Membranes: A Computational View

Efremov, Roman G., Polyansky, Anton A., Chugunov, Anton, Krylov, Nikolay A., Nolde, Dmitry, Volynsky, Pavel E., Kuznetsov, Andrey, Maurice, Pascal

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 47 KB

english, 2019